I suggest you check my "How to run 5.00 M33 and 5.50 GEN on the same PSP" thread in the PSP Homebrew subforum, it's nice to have a full set of CFW installed from 3.71 M33 up to 5.50 GEN for testing such things.
Edit: About games not showing up... did you start a different game in the meantime, maybe Rockband Unplugged?
This and a few other games are known to modify / delete inodes as a form of anti-cfw protection... effectively making games "invisible" to the PSP even though they are there...
If you did, a simple reformating of the memory stick and copying games over once more should solve the problem.



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